[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 35 items for (author: kinoshita & c)

EMDB-36048:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36049:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36050:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36051:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36052:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36053:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36055:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7t:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7u:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7v:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7w:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7x:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7y:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j80:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-32407:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-32408:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-32409:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

EMDB-34685:
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Kinoshita C, Saotome M, Kagawa W, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbv:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-4) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbw:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-7wbx:
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-3) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Sekine S, Takizawa Y, Kurumizaka H

PDB-8he5:
RNA polymerase II elongation complex bound with Rad26 and Elf1, stalled at SHL(-3.5) of the nucleosome
Method: single particle / : Osumi K, Kujirai T, Ehara H, Kinoshita C, Saotome M, Kagawa W, Sekine S, Takizawa Y, Kurumizaka H

EMDB-34430:
Cryo-EM structure of the human RAD52 protein
Method: single particle / : Kinoshita C, Takizawa Y, Saotome M, Ogino S, Kurumizaka H, Kagawa W

PDB-8h1p:
Cryo-EM structure of the human RAD52 protein
Method: single particle / : Kinoshita C, Takizawa Y, Saotome M, Ogino S, Kurumizaka H, Kagawa W

EMDB-30360:
34-fold symmetry salmonella MS ring
Method: single particle / : Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K

EMDB-30361:
11 fold-syymetry of salmonella MS ring
Method: single particle / : Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K

EMDB-30363:
Without imposing symmetry of salmonella MS ring
Method: single particle / : Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K

EMDB-30613:
Structure of the bacterial flagellar basal body
Method: single particle / : Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K

EMDB-30940:
Salmonella flagella MS-ring protein FliF 1-503 having C33 symmetry
Method: single particle / : Makino F, Kawamoto A, Namba K

EMDB-30941:
Salmonella flagella MS-ring protein FliF 1-456 having C35 symmetry
Method: single particle / : Makino F, Kawamoto A, Namba K

EMDB-30942:
Salmonella flagella MS-ring protein FliF 1-456 having C34 symmetry
Method: single particle / : Makino F, Kawamoto A, Namba K

EMDB-30612:
34-fold symmetry Salmonella S ring formed by full-length FliF
Method: single particle / : Kawamoto A, Miyata T

PDB-7d84:
34-fold symmetry Salmonella S ring formed by full-length FliF
Method: single particle / : Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K

EMDB-30378:
Salmonella FliF-FliG ring complex
Method: single particle / : Kawamoto A, Kato T, Kinoshita M, Minamino T, Namba K

EMDB-30379:
11-fold symmetry of Salmonella FliF-FliG ring complex
Method: single particle / : Kawamoto A, Kato T, Kinoshita M, Minamino T, Namba K

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more